How opportunistic infections are tested on Step 1

Vignettes give an immunosuppressed host and a syndrome and ask for the organism, the stain, the prophylaxis threshold, or the drug.

workspace_premium Defect first, organism second

Ask which arm of immunity is missing. Each arm defends against a characteristic set of organisms, so the defect narrows the differential before any test result.

Match the defect to the organism

Primary and acquired immune defects produce overlapping patterns.

Immune defectT cellsViruses, fungi,mycobacteria,PCPB cellsEncapsulatedbacteria,enteroviruses,GiardiaNeutrophilsS. aureus,gram-negatives,Aspergillus,CandidaSpleenS. pneumoniae,H. influenzae,N. meningitidisC5–C9RecurrentNeisseria
Defect predicts organism. Chronic granulomatous disease (NADPH oxidase) is the classic neutrophil-function example: catalase-positive organisms such as S. aureus, Aspergillus, Burkholderia, Serratia, and Nocardia.

The HIV CD4 ladder

As CD4 counts fall, infections appear in a predictable order. Antiretroviral therapy reverses the ladder as counts recover.

Falling CD4CD4 < 500Oral thrush, zoster, TB, hairy leukoplakia (EBV),Kaposi sarcomaCD4 < 200Pneumocystis pneumonia, HIV dementia, PML (JC)CD4 < 100Toxoplasma, Cryptococcus, Candida esophagitis,histoplasmosisCD4 < 50CMV retinitis and colitis, Mycobacterium aviumcomplex
CD4 ladder. AIDS is defined by CD4 < 200/mm³ or an AIDS-defining illness. TB can occur at any CD4 count.
OrganismSyndromeDiagnosisTreatment
Pneumocystis jiroveciiDry cough, hypoxia, bilateral ground-glass opacitiesSilver stain of BAL; ↑ LDH, ↑ β-D-glucanTMP-SMX; add steroids if PaO₂ < 70 mm Hg
Toxoplasma gondiiMultiple ring-enhancing brain lesionsPositive IgG; response to therapySulfadiazine + pyrimethamine + leucovorin
Cryptococcus neoformansSubacute meningitis, high opening pressureIndia ink; capsular antigenAmphotericin B + flucytosine, then fluconazole
CMVRetinitis (cottage cheese and ketchup), colitis, esophagitisFunduscopy; owl's eye inclusionsGanciclovir or valganciclovir
Mycobacterium avium complexFever, weight loss, diarrhea, ↑ alkaline phosphataseBlood cultureClarithromycin or azithromycin + ethambutol
JC virusPML: nonenhancing white-matter lesionsMRI; JC PCR in CSFART; no specific antiviral

Starting ART can unmask or worsen an infection — immune reconstitution inflammatory syndrome (IRIS).

Other immunocompromised hosts

Chemotherapy, transplant, and asplenia produce their own patterns.

Neutropenia (chemotherapy)ANC < 500/mm³ defines high riskGram-negative rods, includingPseudomonasGram-positive cocci from lines andmucosaProlonged: Aspergillus, CandidaFever = emergency: cefepime orpiperacillin-tazobactamSolid-organ transplantMonth 1: surgical and nosocomialbacteriaMonths 1–6: CMV, Pneumocystis, BK virus,fungiAfter 6 months: community infections,EBV-driven PTLDProphylaxis: TMP-SMX, valganciclovirCalcineurin inhibitors impair T-cellactivationvs
Timing matters after transplant. Post-transplant lymphoproliferative disorder (PTLD) arises from EBV-infected B cells escaping T-cell control.
functions Worked example — read the CD4 count

A 38-year-old with untreated HIV and a CD4 count of 80/mm³ has 2 weeks of headache and fever. Neck stiffness is mild. Opening pressure on lumbar puncture is 32 cm H₂O, and CSF shows encapsulated budding yeasts. What is the next step beyond antifungals?

  1. Encapsulated budding yeasts in CSF at CD4 < 100 mean Cryptococcus neoformans.
  2. Induction therapy is amphotericin B plus flucytosine.
  3. Raised intracranial pressure is a major cause of death in cryptococcal meningitis.
  4. Serial therapeutic lumbar punctures relieve the pressure; ART is delayed a few weeks to reduce IRIS.

Answer. Repeat therapeutic lumbar punctures to lower intracranial pressure, with ART started about 4–6 weeks after antifungal induction.

Prophylaxis in HIV

Primary prophylaxis prevents first episodes; it can stop once ART raises the CD4 count above the threshold for about 3 months.

CD4 thresholdOrganismProphylaxis
< 200/mm³Pneumocystis jiroveciiTMP-SMX (alternatives: dapsone, atovaquone)
< 100/mm³ and Toxoplasma IgG positiveToxoplasma gondiiTMP-SMX
< 50/mm³ (not starting ART promptly)Mycobacterium avium complexAzithromycin — no longer routine if ART is started
Any CD4, positive TB screenLatent tuberculosisIsoniazid (with pyridoxine) or a rifamycin-based regimen

Dapsone can cause hemolysis in G6PD deficiency and methemoglobinemia.