How antibiotic mechanisms are tested on Step 1

Questions name a drug and ask for its target, or describe a target and ask which drug, or link a mechanism to a toxicity (aminoglycoside ototoxicity, fluoroquinolone tendon rupture) or a resistance mechanism.

workspace_premium Selective toxicity

Bacteria have peptidoglycan, 70S ribosomes (30S + 50S), DNA gyrase, and must synthesize folate. Humans have none of these targets in the same form, which is why antibiotics can kill bacteria at doses that spare host cells.

Five targets

Sort every antibacterial by the structure it attacks.

Antibacterial targetsCell wallβ-lactams,vancomycin,bacitracin30SribosomeGentamicin,doxycycline50SribosomeMacrolides,clindamycin,linezolid,chloramphenicolDNAQuinolones,metronidazoleFolateSulfonamides,trimethoprim
Targets. Daptomycin and polymyxins are a sixth group: they disrupt the cell membrane (gram-positive and gram-negative, respectively).
ClassMechanismCidal or staticSignature toxicity
Penicillins, cephalosporins, carbapenemsBind PBPs; block transpeptidation (cross-linking)CidalHypersensitivity; seizures (imipenem); C. difficile
VancomycinBinds D-Ala-D-Ala; blocks glycan polymerizationCidalInfusion reaction (vancomycin flushing), nephro- and ototoxicity
Aminoglycosides30S: block initiation complex, cause misreadingCidalNephrotoxicity, ototoxicity, neuromuscular blockade
Tetracyclines30S: block aminoacyl-tRNA attachmentStaticTooth discoloration, photosensitivity; chelated by Ca²⁺, Mg²⁺, Fe²⁺
Macrolides50S: block translocationStaticQT prolongation, GI motility, P-450 inhibition
Clindamycin50S: block peptide transferStaticC. difficile colitis
Linezolid50S: block initiation complexStaticThrombocytopenia, serotonin syndrome
Chloramphenicol50S: block peptidyltransferaseStaticAplastic anemia, gray baby syndrome
FluoroquinolonesInhibit DNA gyrase and topoisomerase IVCidalTendon rupture, QT prolongation, cartilage damage in children
MetronidazoleFree radicals damage DNA (anaerobes)CidalDisulfiram-like reaction, metallic taste
TMP-SMXSequential folate blockadeCidal in combinationHyperkalemia, megaloblastic anemia, Stevens-Johnson, kernicterus in neonates

Macrolides include erythromycin, azithromycin, and clarithromycin; tetracyclines include doxycycline and minocycline.

Cell-wall synthesis

Peptidoglycan is built from NAG-NAM units with peptide side chains, then cross-linked. Drugs act at successive steps.

PrecursorsFosfomycin,cycloserineCarriertransportBacitracinblocksrecyclingPolymerizeVancomycinbindsD-Ala-D-AlaCross-linkβ-lactamsinhibit PBPsRigidwallResistsosmotic lysis
Peptidoglycan assembly. Without cross-links, autolysins and osmotic pressure lyse the dividing bacterium — so cell-wall agents kill only growing cells.

Bactericidal vs bacteriostatic

Bactericidal drugs kill; bacteriostatic drugs stop growth and rely on host defenses to clear the infection.

Bactericidalβ-lactams, vancomycinAminoglycosidesFluoroquinolonesMetronidazoleDaptomycinPreferred for endocarditis, meningitis,neutropeniaBacteriostaticTetracyclinesMacrolidesClindamycinLinezolid (vs staphylococci)ChloramphenicolSulfonamides or trimethoprim alonevs
Cidal vs static. Combining a static drug with a cell-wall agent can be antagonistic, because cell-wall agents need actively growing bacteria.
functions Worked example — connect target to toxicity

A patient treated for gram-negative sepsis develops rising creatinine and new hearing loss. Which drug is most likely responsible, and what is its target?

  1. Nephrotoxicity plus ototoxicity is the signature of aminoglycosides (gentamicin, tobramycin, amikacin).
  2. Aminoglycosides bind the 30S ribosomal subunit, causing misreading of mRNA and blocking the initiation complex.
  3. Their uptake requires oxygen-dependent transport, so they have no activity against anaerobes.

Answer. An aminoglycoside acting on the 30S subunit. Risk rises with loop diuretics, vancomycin, and high trough levels.

Antibiotics in special populations

Several classes are avoided in pregnancy, children, or specific deficiencies because of how their mechanism or chemistry interacts with developing tissue.

Avoid inDrugReason
PregnancyTetracyclinesBind calcium in developing teeth and bone
PregnancyAminoglycosidesFetal ototoxicity (CN VIII)
PregnancyFluoroquinolonesCartilage damage in animal studies
Late pregnancy, neonatesSulfonamidesDisplace bilirubin from albumin — kernicterus
NeonatesChloramphenicolImmature glucuronidation — gray baby syndrome
G6PD deficiencySulfonamides, dapsone, nitrofurantoin, primaquineOxidative hemolysis
Myasthenia gravisAminoglycosides, fluoroquinolonesWorsen neuromuscular transmission

Safe choices in pregnancy include penicillins, cephalosporins, azithromycin, and nitrofurantoin (avoid near term).