How antibiotic mechanisms are tested on Step 1
Questions name a drug and ask for its target, or describe a target and ask which drug, or link a mechanism to a toxicity (aminoglycoside ototoxicity, fluoroquinolone tendon rupture) or a resistance mechanism.
Bacteria have peptidoglycan, 70S ribosomes (30S + 50S), DNA gyrase, and must synthesize folate. Humans have none of these targets in the same form, which is why antibiotics can kill bacteria at doses that spare host cells.
Five targets
Sort every antibacterial by the structure it attacks.
| Class | Mechanism | Cidal or static | Signature toxicity |
|---|---|---|---|
| Penicillins, cephalosporins, carbapenems | Bind PBPs; block transpeptidation (cross-linking) | Cidal | Hypersensitivity; seizures (imipenem); C. difficile |
| Vancomycin | Binds D-Ala-D-Ala; blocks glycan polymerization | Cidal | Infusion reaction (vancomycin flushing), nephro- and ototoxicity |
| Aminoglycosides | 30S: block initiation complex, cause misreading | Cidal | Nephrotoxicity, ototoxicity, neuromuscular blockade |
| Tetracyclines | 30S: block aminoacyl-tRNA attachment | Static | Tooth discoloration, photosensitivity; chelated by Ca²⁺, Mg²⁺, Fe²⁺ |
| Macrolides | 50S: block translocation | Static | QT prolongation, GI motility, P-450 inhibition |
| Clindamycin | 50S: block peptide transfer | Static | C. difficile colitis |
| Linezolid | 50S: block initiation complex | Static | Thrombocytopenia, serotonin syndrome |
| Chloramphenicol | 50S: block peptidyltransferase | Static | Aplastic anemia, gray baby syndrome |
| Fluoroquinolones | Inhibit DNA gyrase and topoisomerase IV | Cidal | Tendon rupture, QT prolongation, cartilage damage in children |
| Metronidazole | Free radicals damage DNA (anaerobes) | Cidal | Disulfiram-like reaction, metallic taste |
| TMP-SMX | Sequential folate blockade | Cidal in combination | Hyperkalemia, megaloblastic anemia, Stevens-Johnson, kernicterus in neonates |
Macrolides include erythromycin, azithromycin, and clarithromycin; tetracyclines include doxycycline and minocycline.
Cell-wall synthesis
Peptidoglycan is built from NAG-NAM units with peptide side chains, then cross-linked. Drugs act at successive steps.
Bactericidal vs bacteriostatic
Bactericidal drugs kill; bacteriostatic drugs stop growth and rely on host defenses to clear the infection.
A patient treated for gram-negative sepsis develops rising creatinine and new hearing loss. Which drug is most likely responsible, and what is its target?
- Nephrotoxicity plus ototoxicity is the signature of aminoglycosides (gentamicin, tobramycin, amikacin).
- Aminoglycosides bind the 30S ribosomal subunit, causing misreading of mRNA and blocking the initiation complex.
- Their uptake requires oxygen-dependent transport, so they have no activity against anaerobes.
Answer. An aminoglycoside acting on the 30S subunit. Risk rises with loop diuretics, vancomycin, and high trough levels.
Antibiotics in special populations
Several classes are avoided in pregnancy, children, or specific deficiencies because of how their mechanism or chemistry interacts with developing tissue.
| Avoid in | Drug | Reason |
|---|---|---|
| Pregnancy | Tetracyclines | Bind calcium in developing teeth and bone |
| Pregnancy | Aminoglycosides | Fetal ototoxicity (CN VIII) |
| Pregnancy | Fluoroquinolones | Cartilage damage in animal studies |
| Late pregnancy, neonates | Sulfonamides | Displace bilirubin from albumin — kernicterus |
| Neonates | Chloramphenicol | Immature glucuronidation — gray baby syndrome |
| G6PD deficiency | Sulfonamides, dapsone, nitrofurantoin, primaquine | Oxidative hemolysis |
| Myasthenia gravis | Aminoglycosides, fluoroquinolones | Worsen neuromuscular transmission |
Safe choices in pregnancy include penicillins, cephalosporins, azithromycin, and nitrofurantoin (avoid near term).
